TY - JOUR
T1 - Comparative analysis of the complete chloroplast genomes from six neotropical species of myrteae (Myrtaceae)
AU - Rodrigues, Nureyev F.
AU - Balbinott, Natalia
AU - Paim, Igor
AU - Guzman, Frank
AU - Margis, Rogerio
N1 - Publisher Copyright:
© 2020, Sociedade Brasileira de Genética.
PY - 2020
Y1 - 2020
N2 - Myrteae is the largest and most diverse tribe within Myrtaceae and represents the majority of its diversity in the Neotropics. Members of Myrteae hold ecological importance in tropical biomes for the provision of food sources for many animal species. Thus, due to its several roles, a growing interest has been addressed to this group. In this study, we report the sequencing and de novo assembly of the complete chloroplast (cp) genomes of six Myrteae spe-cies: Eugenia brasiliensis, E. pyriformis, E. nitida, Myrcianthes pungens, Plinia edulis and Psidium cattleianum. We characterized genome structure, gene content, and identified SSRs to detect variation within Neotropical Myrteae. The six newly sequenced plastomes exhibit a typical quadripartite structure, gene content and organization highly conserved among Myrtaceae species. Some differences in genome length, protein-coding genes and non-coding regions were found. Besides, IR boundaries present structural changes among species. Increased sequence diversity was observed in some intergenic regions, suggesting their suitability for investigating intra-and interspecific genetic diversity in populational studies. These data also contribute to the improvement of taxa sampling in further phylogen-etic investigations to understand Myrtaceae evolution.
AB - Myrteae is the largest and most diverse tribe within Myrtaceae and represents the majority of its diversity in the Neotropics. Members of Myrteae hold ecological importance in tropical biomes for the provision of food sources for many animal species. Thus, due to its several roles, a growing interest has been addressed to this group. In this study, we report the sequencing and de novo assembly of the complete chloroplast (cp) genomes of six Myrteae spe-cies: Eugenia brasiliensis, E. pyriformis, E. nitida, Myrcianthes pungens, Plinia edulis and Psidium cattleianum. We characterized genome structure, gene content, and identified SSRs to detect variation within Neotropical Myrteae. The six newly sequenced plastomes exhibit a typical quadripartite structure, gene content and organization highly conserved among Myrtaceae species. Some differences in genome length, protein-coding genes and non-coding regions were found. Besides, IR boundaries present structural changes among species. Increased sequence diversity was observed in some intergenic regions, suggesting their suitability for investigating intra-and interspecific genetic diversity in populational studies. These data also contribute to the improvement of taxa sampling in further phylogen-etic investigations to understand Myrtaceae evolution.
KW - Conservation
KW - CpDNA
KW - Genomic resource
KW - Plastid
KW - Populational genetics
UR - http://www.scopus.com/inward/record.url?scp=85083888950&partnerID=8YFLogxK
U2 - 10.1590/1678-4685-gmb-2019-0302
DO - 10.1590/1678-4685-gmb-2019-0302
M3 - Artículo
AN - SCOPUS:85083888950
SN - 1415-4757
VL - 43
JO - Genetics and Molecular Biology
JF - Genetics and Molecular Biology
IS - 2
M1 - e20190302
ER -